Terminator™ 5´-Phosphate-Dependent Exonuclease

Applications

  • Characterize the 5´ termini of RNA transcripts.
  • Enrich for mRNA in prokaryotic or eukaryotic total RNA preparations (Fig. 1).

Note: For RNA-Seq applications, we recommend using a Ribo-Zero™ Kit.

Terminator™ 5´-Phosphate-Dependent Exonuclease* is a processive 5´→3´ exonuclease that digests RNA that has a 5´-monophosphate end. It does not digest RNA that has a 5´-triphosphate, 5´-cap or 5´-hydroxyl group. Terminator Exonuclease is not inhibited by proteinaceous RNase inhibitors, such as Epicentre’s ScriptGuard™ RNase Inhibitor or placental ribonuclease inhibitors.

Unit Definition: One unit of Terminator™ Exonuclease digests 1 µg of rRNA substrate to acid-soluble nucleotides in 60 minutes at 30°C under standard assay conditions.

Storage Buffer: 50% glycerol containing 0.05 M Tris-HCl (pH 7.5), 100 mM NaCl, 0.1 mM EDTA, 1 mM DTT, and 0.1% Triton™ X-100.

Figure 1. A 1-hour Terminator™ Exonuclease reaction digests the large rRNAs in a eukaryotic or prokaryotic total RNA sample, producing an enriched mRNA preparation.
Figure 2. Normal rat kidney (NRK) total RNA before (A) and after (B) Terminator™ Exonuclease treatment. The Terminator Exonuclease-treated RNA was concentrated 10-fold. Figure 3. Denaturing agarose gel analysis of E. coli total RNA before (-) and after (+) Terminator™ Exonuclease digestion. The Terminator Exonuclease-treated RNA was concentrated 10-fold.

 

Figure 4. (click to enlarge) Overview of a process successfully used at Epicentre to characterize the 5´-terminal end group of RNAs using Terminator™ 5´-Phosphate-Dependent Exonuclease (Terminator Exo), alkaline phosphatase (AP) and tobacco acid pyrophosphatase (TAP). RT-PCR was used to monitor the status of individual transcripts.

*Patent pending.

Ordering

Catalog No. Concentration Size
Terminator™ 5´-Phosphate-Dependent Exonuclease
TER51020 1 U/µl 40 Units
Includes 10X Terminator™ Reaction Buffers A and B.